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@article{sheldon2000differential,
  title={Differential allocation: tests, mechanisms and implications},
  author={Sheldon, Ben C},
  journal={Trends in Ecology \& Evolution},
  volume={15},
  number={10},
  pages={397--402},
  year={2000},
  publisher={Elsevier}
}

@article{rowe2003mating,
	title={Mating systems and the conservation of commercially exploited marine fish},
	author={Rowe, Sherrylynn and Hutchings, Jeffrey A},
	journal={Trends in Ecology \& Evolution},
	volume={18},
	number={11},
	pages={567--572},
	year={2003},
	publisher={Elsevier}
}
@article{ward2016understanding,
	title={Understanding the individual to implement the ecosystem approach to fisheries management},
	author={Ward, Taylor D and Algera, Dirk A and Gallagher, Austin J and Hawkins, Emily and Horodysky, Andrij and J{\o}rgensen, Christian and Killen, Shaun S and McKenzie, David J and Metcalfe, Julian D and Peck, Myron A and others},
	journal={Conservation Physiology},
	volume={4},
	number={1},
	pages={cow005},
	year={2016},
	publisher={Oxford University Press}
}
@article{law2000fishing,
	title={Fishing, selection, and phenotypic evolution},
	author={Law, Richard},
	journal={ICES Journal of Marine Science: Journal du Conseil},
	volume={57},
	number={3},
	pages={659--668},
	year={2000},
	publisher={Oxford University Press}
}
@article{conrad2011behavioural,
	title={Behavioural syndromes in fishes: a review with implications for ecology and fisheries management},
	author={Conrad, J Louise and Weinersmith, Kelly L and Brodin, Tomas and Saltz, JB and Sih, A},
	journal={Journal of Fish Biology},
	volume={78},
	number={2},
	pages={395--435},
	year={2011},
	publisher={Wiley Online Library}
}

@article{allendorf2008genetic,
	title={Genetic effects of harvest on wild animal populations},
	author={Allendorf, Fred W and England, Phillip R and Luikart, Gordon and Ritchie, Peter A and Ryman, Nils},
	journal={Trends in Ecology \& Evolution},
	volume={23},
	number={6},
	pages={327--337},
	year={2008},
	publisher={Elsevier}
}
@incollection{trippel1997effects,
	title={Effects of adult age and size structure on reproductive output in marine fishes},
	author={Trippel, Edward A and Kjesbu, Olav S and Solemdal, Per},
	booktitle={Early life history and recruitment in fish populations},
	pages={31--62},
	year={1997},
	publisher={Springer}
}

@article{jennings2005reference,
	title={Reference points and reference directions for size-based indicators of community structure},
	author={Jennings, Simon and Dulvy, Nicholas K},
	journal={ICES Journal of Marine Science: Journal du Conseil},
	volume={62},
	number={3},
	pages={397--404},
	year={2005},
	publisher={Oxford University Press}
}

@article{killen2013environmental,
	title={Environmental stressors alter relationships between physiology and behaviour},
	author={Killen, Shaun S and Marras, Stefano and Metcalfe, Neil B and McKenzie, David J and Domenici, Paolo},
	journal={Trends in Ecology \& Evolution},
	volume={28},
	number={11},
	pages={651--658},
	year={2013},
	publisher={Elsevier}
}

@article{eliason2011differences,
	title={Differences in thermal tolerance among sockeye salmon populations},
	author={Eliason, Erika J and Clark, Timothy D and Hague, Merran J and Hanson, Linda M and Gallagher, Zo{\"e} S and Jeffries, Ken M and Gale, Marika K and Patterson, David A and Hinch, Scott G and Farrell, Anthony P},
	journal={Science},
	volume={332},
	number={6025},
	pages={109--112},
	year={2011},
	publisher={American Association for the Advancement of Science}
}

@article{biro2010consistent,
	title={Do consistent individual differences in metabolic rate promote consistent individual differences in behavior?},
	author={Biro, Peter A and Stamps, Judy A},
	journal={Trends in Ecology \& Evolution},
	volume={25},
	number={11},
	pages={653--659},
	year={2010},
	publisher={Elsevier}
}

@article{valavanis2008modelling,
	title={Modelling of essential fish habitat based on remote sensing, spatial analysis and GIS},
	author={Valavanis, Vasilis D and Pierce, Graham J and Zuur, Alain F and Palialexis, Andreas and Saveliev, Anatoly and Katara, Isidora and Wang, Jianjun},
	journal={Hydrobiologia},
	volume={612},
	number={1},
	pages={5--20},
	year={2008},
	publisher={Springer}
}

@article{riegl2002effects,
	title={Effects of the 1996 and 1998 positive sea-surface temperature anomalies on corals, coral diseases and fish in the Arabian Gulf (Dubai, UAE)},
	author={Riegl, Bernhard},
	journal={Marine biology},
	volume={140},
	number={1},
	pages={29--40},
	year={2002},
	publisher={Springer}
}

@article{richardson2004climate,
	title={Climate impact on plankton ecosystems in the Northeast Atlantic},
	author={Richardson, Anthony J and Schoeman, David S},
	journal={Science},
	volume={305},
	number={5690},
	pages={1609--1612},
	year={2004},
	publisher={American Association for the Advancement of Science}
}

@article{morita2001growth,
	title={Growth of chum salmon (Oncorhynchus keta) correlated with sea-surface salinity in the North Pacific},
	author={Morita, Shoko H and Morita, Kentaro and Sakano, Hiroyuki},
	journal={ICES Journal of Marine Science: Journal du Conseil},
	volume={58},
	number={6},
	pages={1335--1339},
	year={2001},
	publisher={Oxford University Press}
}

@article{goarant2007anchovy,
	title={Anchovy (Engraulis encrasicolus) egg density measurements in the Bay of Biscay: evidence for the spatial variation in egg density with sea surface salinity},
	author={Goarant, Anne and Petitgas, Pierre and Bourriau, Paul},
	journal={Marine Biology},
	volume={151},
	number={5},
	pages={1907},
	year={2007},
	publisher={Springer}
}

@article{hardman2003relating,
	title={Relating sardine recruitment in the Northern Benguela to satellite-derived sea surface height using a neural network pattern recognition approach},
	author={Hardman-Mountford, NJ and Richardson, AJ and Boyer, DC and Kreiner, A and Boyer, HJ},
	journal={Progress in Oceanography},
	volume={59},
	number={2},
	pages={241--255},
	year={2003},
	publisher={Elsevier}
}

@article{wells2007quantifying,
	title={Quantifying the effects of wind, upwelling, curl, sea surface temperature and sea level height on growth and maturation of a California Chinook salmon (Oncorhynchus tshawytscha) population},
	author={Wells, Brian K and Grimes, Churchill B and Waldvogel, James B},
	journal={Fisheries Oceanography},
	volume={16},
	number={4},
	pages={363--382},
	year={2007},
	publisher={Wiley Online Library}
}

@article{miller2002determination,
	title={Determination of lethal dissolved oxygen levels for selected marine and estuarine fishes, crustaceans, and a bivalve},
	author={Miller, D and Poucher, S and Coiro, L},
	journal={Marine Biology},
	volume={140},
	number={2},
	pages={287--296},
	year={2002},
	publisher={Springer}
}

@article{breitburg1997varying,
	title={Varying effects of low dissolved oxygen on trophic interactions in an estuarine food web},
	author={Breitburg, Denise L and Loher, Timothy and Pacey, Carol A and Gerstein, Adam},
	journal={Ecological Monographs},
	volume={67},
	number={4},
	pages={489--507},
	year={1997},
	publisher={Wiley Online Library}
}

@article{gomes2002fishery,
	title={Fishery yield relative to chlorophyll a in reservoirs of the Upper Paran{\'a} River, Brazil},
	author={Gomes, LC and Miranda, LE and Agostinho, AA},
	journal={Fisheries Research},
	volume={55},
	number={1},
	pages={335--340},
	year={2002},
	publisher={Elsevier}
}

@article{shannon1984spatial,
	title={Spatial and temporal distribution of chlorophyll in southern African waters as deduced from ship and satellite measurements and their implications for pelagic fisheries},
	author={Shannon, LV and Hutchings, L and Bailey, GW and Shelton, PA},
	journal={South African Journal of Marine Science},
	volume={2},
	number={1},
	pages={109--130},
	year={1984},
	publisher={Taylor \& Francis}
}

@article{werner1997role,
	title={The role of hydrodynamics in explaining variability in fish populations},
	author={Werner, Francisco E and Quinlan, John A and Blanton, Brian O and Luettich, Richard A},
	journal={Journal of Sea Research},
	volume={37},
	number={3-4},
	pages={195--212},
	year={1997},
	publisher={Elsevier}
}

@article{chassot2011satellite,
	title={Satellite remote sensing for an ecosystem approach to fisheries management},
	author={Chassot, Emmanuel and Bonhommeau, Sylvain and Reygondeau, Gabriel and Nieto, Karen and Polovina, Jeffrey J and Huret, Martin and Dulvy, Nicholas K and Demarcq, Herve},
	journal={ICES Journal of Marine Science: Journal du Conseil},
	volume={68},
	number={4},
	pages={651--666},
	year={2011},
	publisher={Oxford University Press}
}

@article{green2013designing,
	title={Designing marine protected area networks to achieve fisheries, biodiversity, and climate change objectives in tropical ecosystems: A practitioner guide},
	author={Green, Alison and White, A and Kilarski, Stacey},
	journal={The Nature Conservancy, and the USAID Coral Triangle Support Partnership, Cebu City, Philippines. viii},
	year={2013}
}

@article{hilborn2004can,
	title={When can marine reserves improve fisheries management?},
	author={Hilborn, Ray and Stokes, Kevin and Maguire, Jean-Jacques and Smith, Tony and Botsford, Louis W and Mangel, Marc and Orensanz, Jos{\'e} and Parma, Ana and Rice, Jake and Bell, Johann and others},
	journal={Ocean \& Coastal Management},
	volume={47},
	number={3},
	pages={197--205},
	year={2004},
	publisher={Elsevier}
}

@article{valavanis2008modelling,
	title={Modelling of essential fish habitat based on remote sensing, spatial analysis and GIS},
	author={Valavanis, Vasilis D and Pierce, Graham J and Zuur, Alain F and Palialexis, Andreas and Saveliev, Anatoly and Katara, Isidora and Wang, Jianjun},
	journal={Hydrobiologia},
	volume={612},
	number={1},
	pages={5--20},
	year={2008},
	publisher={Springer}
}

@article{pinnegar2000trophic,
	title={Trophic cascades in benthic marine ecosystems: lessons for fisheries and protected-area management},
	author={Pinnegar, JK and Polunin, NVC and Francour, P and Badalamenti, F and Chemello, R and Harmelin-Vivien, M-L and Hereu, B and Milazzo, M and Zabala, M and d'Anna, G and others},
	journal={Environmental Conservation},
	volume={27},
	number={02},
	pages={179--200},
	year={2000},
	publisher={Cambridge Univ Press}
}

@article{frank2005trophic,
	title={Trophic cascades in a formerly cod-dominated ecosystem},
	author={Frank, Kenneth T and Petrie, Brian and Choi, Jae S and Leggett, William C},
	journal={Science},
	volume={308},
	number={5728},
	pages={1621--1623},
	year={2005},
	publisher={American Association for the Advancement of Science}
}

@article{pennino2012can,
	title={Can a simple Pelagic-Demersal ratio explain ecosystem functioning},
	author={Pennino, Maria Grazia and Bellido, Jos{\'e} Maria},
	journal={Biodiversity J},
	volume={3},
	number={1},
	pages={69--78},
	year={2012}
}

@article{pauly2005background,
	title={Background and interpretation of the ‘Marine Trophic Index’as a measure of biodiversity},
	author={Pauly, Daniel and Watson, Reg},
	journal={Philosophical Transactions of the Royal Society of London B: Biological Sciences},
	volume={360},
	number={1454},
	pages={415--423},
	year={2005},
	publisher={The Royal Society}
}

@article{cury2005trophodynamic,
	title={Trophodynamic indicators for an ecosystem approach to fisheries},
	author={Cury, PM and Shannon, LJ and Roux, JP and Daskalov, GM and Jarre, Astrid and Moloney, CL and Pauly, Da},
	journal={ICES Journal of Marine Science: Journal du Conseil},
	volume={62},
	number={3},
	pages={430--442},
	year={2005},
	publisher={Oxford University Press}
}

@article{pauly2008fisheries,
	title={Fisheries in large marine ecosystems: descriptions and diagnoses},
	author={Pauly, D and Alder, J and Booth, S and Cheung, WWL and Christensen, V and Close, C and Sumaila, UR and Swartz, W and Tavakolie, A and Watson, R and others},
	journal={The UNEP large marine ecosystem report: a perspective on changing conditions in LMEs of the World’s Regional Seas. UNEP Regional Seas Reports and Studies},
	number={182},
	pages={23--40},
	year={2008}
}

@article{kleisner2011marine,
	title={THE MARINE TROPHIC INDEX (MTI), THE FISHING IN BALANCE (FIB) INDEX},
	author={Kleisner, Kristin and Pauly, Daniel},
	journal={Fisheries Centre Research Reports},
	volume={19},
	pages={41},
	year={2011}
}

@article{freire2010fishing,
	title={Fishing down Brazilian marine food webs, with emphasis on the east Brazil large marine ecosystem},
	author={Freire, K{\'a}tia MF and Pauly, Daniel},
	journal={Fisheries Research},
	volume={105},
	number={1},
	pages={57--62},
	year={2010},
	publisher={Elsevier}
}

@article{de2000pelagic,
	title={Is the pelagic-demersal ratio from fishery landings a useful proxy for nutrient availability? A preliminary data exploration for the semi-enclosed seas around Europe},
	author={de Leiva Moreno, JI and Agostini, VN and Caddy, JF and Carocci, F},
	journal={ICES Journal of Marine Science: Journal du Conseil},
	volume={57},
	number={4},
	pages={1091--1102},
	year={2000},
	publisher={Oxford University Press}
}

@article{shannon2009exploring,
	title={Exploring the dynamics of ecological indicators using food web models fitted to time series of abundance and catch data},
	author={Shannon, Lynne J and Coll, Marta and Neira, Sergio},
	journal={Ecological Indicators},
	volume={9},
	number={6},
	pages={1078--1095},
	year={2009},
	publisher={Elsevier}
}

@article{mcmichael2004global,
	title={Global climate change},
	author={McMichael, Anthony J and Campbell-Lendrum, Diarmid and Kovats, Sari and Edwards, Sally and Wilkinson, Paul and Wilson, Theresa and Nicholls, Robert and Hales, Simon and Tanser, Frank and Le Sueur, David and others},
	year={2004},
	publisher={Citeseer}
}

@article{doney2009ocean,
	title={Ocean acidification: the other CO2 problem},
	author={Doney, Scott C and Fabry, Victoria J and Feely, Richard A and Kleypas, Joan A},
	journal={Annual review of marine science},
	volume={1},
	pages={169--192},
	year={2009},
	publisher={Annual Reviews}
}

@article{heenan2015climate,
	title={A climate-informed, ecosystem approach to fisheries management},
	author={Heenan, Adel and Pomeroy, Robert and Bell, Johann and Munday, Philip L and Cheung, William and Logan, Cheryl and Brainard, Russell and Amri, Affendi Yang and Ali{\~n}o, Porfirio and Armada, Nygiel and others},
	journal={Marine Policy},
	volume={57},
	pages={182--192},
	year={2015},
	publisher={Elsevier}
}

@article{lea2000climate,
	title={Climate impact of late Quaternary equatorial Pacific sea surface temperature variations},
	author={Lea, David W and Pak, Dorothy K and Spero, Howard J},
	journal={Science},
	volume={289},
	number={5485},
	pages={1719--1724},
	year={2000},
	publisher={American Association for the Advancement of Science}
}

@article{perry2005climate,
	title={Climate change and distribution shifts in marine fishes},
	author={Perry, Allison L and Low, Paula J and Ellis, Jim R and Reynolds, John D},
	journal={science},
	volume={308},
	number={5730},
	pages={1912--1915},
	year={2005},
	publisher={American Association for the Advancement of Science}
}

@article{hoegh2010impact,
	title={The impact of climate change on the world’s marine ecosystems},
	author={Hoegh-Guldberg, Ove and Bruno, John F},
	journal={Science},
	volume={328},
	number={5985},
	pages={1523--1528},
	year={2010},
	publisher={American Association for the Advancement of Science}
}

@article{arrigo2008impact,
	title={Impact of a shrinking Arctic ice cover on marine primary production},
	author={Arrigo, Kevin R and van Dijken, Gert and Pabi, Sudeshna},
	journal={Geophysical Research Letters},
	volume={35},
	number={19},
	year={2008},
	publisher={Wiley Online Library}
}

@article{arrigo2011secular,
	title={Secular trends in Arctic Ocean net primary production},
	author={Arrigo, Kevin R and van Dijken, Gert L},
	journal={Journal of Geophysical Research: Oceans},
	volume={116},
	number={C9},
	year={2011},
	publisher={Wiley Online Library}
}

@article{boning2008response,
	title={The response of the Antarctic Circumpolar Current to recent climate change},
	author={B{\"o}ning, Claus W and Dispert, Astrid and Visbeck, Martin and Rintoul, SR and Schwarzkopf, Franziska U},
	journal={Nature Geoscience},
	volume={1},
	number={12},
	pages={864--869},
	year={2008},
	publisher={Nature Publishing Group}
}
@article{bakun1990global,
	title={Global climate change and intensification of coastal ocean upwelling},
	author={Bakun, Andrew},
	journal={Science},
	volume={247},
	number={4939},
	pages={198--201},
	year={1990}
}
@article{dore2009physical,
	title={Physical and biogeochemical modulation of ocean acidification in the central North Pacific},
	author={Dore, John E and Lukas, Roger and Sadler, Daniel W and Church, Matthew J and Karl, David M},
	journal={Proceedings of the National Academy of Sciences},
	volume={106},
	number={30},
	pages={12235--12240},
	year={2009},
	publisher={National Acad Sciences}
}
@article{orr2005anthropogenic,
	title={Anthropogenic ocean acidification over the twenty-first century and its impact on calcifying organisms},
	author={Orr, James C and Fabry, Victoria J and Aumont, Olivier and Bopp, Laurent and Doney, Scott C and Feely, Richard A and Gnanadesikan, Anand and Gruber, Nicolas and Ishida, Akio and Joos, Fortunat and others},
	journal={Nature},
	volume={437},
	number={7059},
	pages={681--686},
	year={2005},
	publisher={Nature Publishing Group}
}